PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016485051.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 335aa    MW: 36886.4 Da    PI: 10.6359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016485051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004245264221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                      C  C+  F +++nL++H++
  XP_016485051.1 245 MCDLCNVKFDTRENLRSHLS 264
                     6*****************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.28E-82172No hitNo description
SMARTSM004510.183468IPR003604Zinc finger, U1-type
SMARTSM00355173761IPR015880Zinc finger, C2H2-like
PfamPF128744.0E-43861No hitNo description
PROSITE patternPS0002803961IPR007087Zinc finger, C2H2
SuperFamilySSF576676.4E-997150No hitNo description
SMARTSM004510.0023112146IPR003604Zinc finger, U1-type
SMARTSM0035511115139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117139IPR007087Zinc finger, C2H2
PfamPF121716.3E-5117140IPR022755Zinc finger, double-stranded RNA binding
SMARTSM004516.4E-5241275IPR003604Zinc finger, U1-type
SuperFamilySSF576672.93E-8243275No hitNo description
SMARTSM003550.11244268IPR015880Zinc finger, C2H2-like
PfamPF128743.8E-7245268No hitNo description
PROSITE patternPS000280246268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRLLLQAGQS LDKGGTRGGV QHKSGGRGKF SNIAGVARCE LCKIDCGKIS SLKQHESGKR  60
HRRSLKKLEA ENRTVSDIQN VQKPSGDLKP GTNMKPGGQH KSGGRGKFSN IAGVARCELC  120
KIDYGNMTSL KQHESGKRHR KNLKKLEAEN RTVSDIQNVQ KPSGDLKPET NMKPDDLPKE  180
EETKQNPPPL DTILSEIRLG TELKINDAQC DVVPTRGLKR KMLGGEGQAK KISKAKRRLF  240
VIPLMCDLCN VKFDTRENLR SHLSGRKHKS KLKCFEGRLG LQALYPPNHI TQTAYHWQGV  300
QQIFKATQVS DPIAGASVLP QTHNATPSAT GVSII
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016485051.10.0PREDICTED: zinc finger protein 385D-like
TrEMBLM1AV281e-48M1AV28_SOLTU; Uncharacterized protein
TrEMBLM1AV302e-48M1AV30_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000310062e-46(Solanum tuberosum)